Will Byrnes's Reviews > Biography of Resistance: The Epic Battle Between People and Pathogens

Biography of Resistance by Muhammad H. Zaman
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bookshelves: brain-candy, history, nonfiction, nature, public-health, science

On January 13, 2017, a brief article from Washoe’s [Washoe County, in Nevada] public health officials was published in the Centers for Disease Control’s Mortality and Morbidity Weekly Report, and it sent shockwaves around the world. It was the first report of its kind—never before had a US county public health official written about a complete failure of every single antibacterial drug that they had available to them.
It was darkly serendipitous that I was reading this book in March, 2020, and that the book would find its way to bookstores in April, when, no doubt, we would still be facing considerable personal and global, medical and economic challenges from what must be deemed public enemy number one, COVID-19. If you will indulge me, I would like to talk a bit about the current [2020] crisis which, while very much related to the book under review, is only one element. I promise to get to the actual book review part before too long.

The SARS epidemic began in 2002. According to the National Health Service in the UK “There’s currently no cure for SARS, but research to find a vaccine is ongoing.” Tick tock, guys, I mean eighteen years is not enough? It gives you some idea of the level of concern about COVID-19. Even the nomenclature can be a bit confusing. “CO” is for “corona,” the type. “VI” is for virus, duh-uh. “D” however, may not be obvious but will be after you read this. Disease. See? The “19” is not the 19th iteration of this malady, but represents the first year in which it was identified, or 2019. You will not find a COVID-18. The actual virus is called “severe acute respiratory syndrome coronavirus 2”, or SARS-CoV-2 by the International Committee on Taxonomy of Viruses. And Yes, it is very much related to the earlier SARS virus and disease.

Two days before my wife was due to return to NYC where she worked several days a week, the first case was confirmed in Manhattan. She still went in. Work is work. In the absence of a corporate ok, most people were reluctant to just call out. How many other people were faced with the same challenge? Go in or stay home? How can one judge the risk if there is no good information yet on how vulnerable one might be to picking up the virus at, say, the Port Authority Bus Terminal, or at Grand Central Station or on the A train, or on the local bus? Maybe your Uber or taxi driver is a carrier and does not even know it. Paranoia can be understandable at such times. For myself, I do not need to interact much with the world, relatively. A good thing, given that I am in the age group most susceptible to the worst results from the virus. But the world does come to me. My wife’s trips to NYC stopped for now, corporate encouraging employees to work from home as much as possible, but we still have a truck-driver relation in the house on a daily basis, and we still have to shop, for food, meds, and other things.

COVID-19 is a global peril because there are currently no drugs available that can dispatch it. [well, there weren't in 2020] Forget a vaccination that is probably well over a year away, if even then. The best one can hope is that, if you get it, you can endure the flu-like symptoms for the duration of the infection, and that your symptoms do not become severe. For the optimistic, The National Institutes of Health reports that they are testing a possible treatment. No date was offered on when the test period would end, or when a decision could be made as to the efficacy of the treatment, the drug Remdesivir, nor, if proven effective, how long it might be before production could be scaled up to provide the vast volumes of the drug that will no doubt be needed.

It used to be that afflictions were named for the place where they were first discovered. MERS, or Middle East Respiratory Syndrome, comes to mind. And it should be known that the Spanish flu actually originated in Kansas, but was first copped to in Spain. Locality use in nomenclature for diseases is now considered unacceptable, as stigmatizing. Of course, there are cynical folks on the right who are deliberately attempting to distract political attention from the colossal failure of the Trump administration in the face of this crisis by poking racist nerves and referring to COVID-19 as the Chinse flu, the Wuhan flu or the Wu-Flu. The hope is that it will prompt Dems to go after them for their racism, and then they could be talking about the attack by Dems and not the administration’s lies, failures, cover-ups, and cluelessness.

This week, the World Health Organization declared COVID-19 a global pandemic. My wife did not travel to Manhattan, but worked the full week from home, and will (and did) until directed otherwise. But the reality of the threat continues to grow (the NBA just postponed the entire 2020 season), MLB has postponed all games, Spring training and regular season, a pointless ban on travel from most of Europe has been announced, and tests for COVID-19 remain in mortally short supply here in the USA. If you can’t test anyone, you can’t confirm an increase in the number of cases, or so I expect the thinking goes in some quarters.

Thanks for indulging me, now on to the book.

description
Muhammad H. Zaman - image from NTNU

Returning to the opening quote from the book, people and bacteria have been engaged in an arms race for a long time, or it might be better called an AMRs (Antimicrobial resistance) race, and it appears that the microbes are one up on us at present.

This is a biography. One might think of it in terms that some of us of a certain age might associate with a TV show from the way-back, This Is Your Life. A celebrity guest would be introduced, then we watched her or him react to a procession of people from their life, usually teachers, old friends, mentors maybe, arresting officers, whatever. I suppose one might think of Biography of Resistance in a similar vein. We are told at the beginning that a malady has been found (see opening quote) that has proved resistant to all known antibiotics. The bug in question was a CRE (carbapenem-resistant Enterobacteriaceae). Many Entero bacteria are harmless, but this family member was Klebsiella pneumoniae, the culprit behind not only many a UTI, but life-threatening sepsis and pneumonia, as well. All known antibiotics (26 at the time) were tried. The patient died of sepsis. So how did this particular bacterium come to be, or, more importantly, how did this level of resistance come to be?

We travel back to when we first found out about our previously unseen fellow Earthlings, and track the advance of our knowledge of them through the centuries. From seeing them at all to understanding that not all our fellow passengers were benign. The action picks up in the mid-late 19th century, as, now recognizing some true enemies, means are found to do battle with them. Then they develop longbows, and we develop armor-plated vehicles, and they develop rocket fired grenades and we develop aircraft and on and on it goes. This history is often fascinating.

One of the things that many popular science books do is to use people as vessels with which to deliver historical and scientific information. (Maybe like inserting a curative virus inside a friendly-looking bacterium in order to slip past defenses of the malignant microbe?) We can more easily relate to other people than we might to raw descriptions of science. And if the scientists in question sometimes have oversized personalities, so much the better. It makes for better story-telling. Some of the names here will be familiar, particularly to any who work or dabble in the life sciences. Maimonides, for example, nailed a description of pneumonia symptoms in the 12th century. Robert Locke’s Micrographia, published in 1665, showed that there is an entire world of living things inside the smallest objects. Antonie van Leeuwenhook built a better mousetrap microscope to significantly boost the resolution of our view. Were he a Python, I suppose he could have founded a Royal Society for Seeing Living Things Inside of Other Things. Louis Pasteur showed that fermentation was done by microscopic animals. (little red bulls maybe?)

Where there is discovery there is often ego, sometimes to the point of personal, professional, and decidedly dickish competitiveness. Some early work in the examination of pneumonia descended to this level, sadly.

You will learn about Robert Koch, a German microbiologist who, in addition to doing breakthrough work on fighting the black death, ran an institute that produced world class international researchers as if he had found a magic way to clone genius. You will also learn of household-name science icons who were not above fudging data when necessary to prove a point.

description
Robert Koch was the Professor Xavier to a generation of microbiological superheroes of the late 19th and early 20th centuries, training such household names as Kitisato (a household name in Japan), Julius Petri, yes, of that dish, and Paul Ehrlich, notable for his concerns about population growth, finding a cure for syphilis, and a for being the father of chemotherapy. - image from NobelPrize.org

It is worth knowing how antibiotics actually work, what it is that they do, and how they do it. (Teachers and classmates report how the biographed bac snuck off the schoolgrounds and got into all sorts of trouble, while somehow maintaining top grades) Zaman offers a very readable description of ways in which antibiotics (ABs) go after bacteria and utterly fascinating material about the defenses, some of which are remarkably complex, that bacteria have developed (evolved) to fend off such attacks, including using antibiotic attackers as food. He also reports on different sorts of ABs that have been developed over time, things like bacteriophages, (bacteria eaters) aka phages, sulfa drugs, and a kind of fungus that disarms bacteria.

One large surprise is that bacteria develop antibacterial defenses independent of the presence of humans. (Brothers and sisters appear on stage, telling about what a rotten sib the bacterium was) It would appear that we have joined a battle that has been raging for as long as bacteria have been on the planet. Another is the sources that are used when looking for new AB materials to bring to bear in the ongoing war. It was also heartening to learn of a particular confluence of disparate scientific disciplines joining forces to advance our knowledge, and hopefully enhance our armory.

description
Actually, resistance, despite some temporary setbacks, seems to be working out pretty well for pathogenic (hostile) microbes

(Lifelong friends, business associates and rivals offer some final praise for the guest of honor) Bringing us up to the present, Zaman catches us up on the dangers we face in the globalization of infection, the misuse of antibiotics as a contributor to the growth of AB resistance, the latest insight on how resistance is replicated, and delves smartly into sociopolitical elements of international health care politics and economics. Some of this is unsurprising, as companies that make their money selling antibiotics lobby against any restrictions, and too many have reduced or eliminated investment in AB research and development, because such products are less likely to earn an optimal ROI than drugs intended for regular, ongoing use. He points out how important it is to involve people other than scientists in the drive to develop new defenses. Economists, politicians, social scientists, anthropologists, writers and more all need to play a part in helping us find ways to survive in what has become, and what we have helped make, a hostile environment. Mother’s milk for policy geeks.

description
Chart is from AMR review

Gripes - I did not keep a running total, but the sheer number of named researchers did seem a bit encyclopedic at times, as if the author felt compelled to incorporate as many people as possible into his narrative. I expect, in reality, he was pulling hair out because of having to leave so many other scientists out of the narrative, but the number left in seemed a bit excessive. I doubt this can be defended as a gripe, more of a personal preference, really. But I find that science writing is hugely enhanced by the presence of a degree of levity. Mary Roach is the most stunning example of the application of (often jejune) humor to otherwise serious popular science narratives. You will be in no danger of having your latte shoot through your nose as you are ambushed by something totally hilarious in this one. Sip on in confidence.

At the very least, The Biography of Resistance will give you some perspective, a more informed look at just how challenging it is for medical science to keep ahead of (or more accurately catch up to) the resistance that diverse, harmful bacteria keep coming up with to make us ill. Doctor Zaman covers a lot of territory in this very readable, relatively brief (263 pages) book. From the history of our learning what microbes are to showing how antibiotics attack bacteria, and how bacteria fight back, to showing the impact of antibiotics in the world, showing how their overuse has worsened an already challenging problem, pointing out what is currently being done, and offering a broad strategy for moving on, incorporating diverse disciplines. You will learn a lot, and I cannot imagine a timelier book as we try to make our way through what could well be called by future historians 2020: The Year of the Plague
If nothing changes, and we continue on the path we’re now on, by 2050 the world will lose 10 million people a year, every year, to resistant infections.

Review first posted – March 13, 2020

Publication date – April 21, 2020

=============================EXTRA STUFF - See below
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Reading Progress

February 27, 2020 – Started Reading
March 9, 2020 – Shelved
March 9, 2020 – Shelved as: brain-candy
March 9, 2020 – Shelved as: history
March 9, 2020 – Shelved as: nonfiction
March 9, 2020 – Shelved as: nature
March 9, 2020 – Shelved as: public-health
March 9, 2020 – Shelved as: science
March 9, 2020 – Finished Reading

Comments Showing 1-50 of 61 (61 new)


message 1: by Will (last edited May 11, 2020 12:16PM) (new) - rated it 4 stars

Will Byrnes ==========In the summer of 2019 GR reduced the allowable review size by 25%, from 20,000 to 15,000 characters. In order to accommodate the text beyond that I have moved it to the comments section directly below, which is HERE! Yay! You found it!

description

=============================EXTRA STUFF

The author’s Twitter page

Zaman is a professor of biomedical engineering at Boston University

Items of Interest
-----Gutenberg - Micrographia by Robert Hooke
-----Svalbard Global Seed Vault
-----More info on Robert Koch
-----More information on Kitasato Shibasaburō
-----Wiki on bacteriophages
-----February 20, 2020 - NY Times - How Does the Coronavirus Compare With the Flu? - by Denise Grady
-----ASAP Science - Pandemic - a 7-minute video that covers the basics – good stuff
-----Another from ASAP Science - The Corona Virus Vaccine Explained - short, sweet and very informative- 10 minute video - watch it
-----ReAct - an NGO based in Uppsala, Sweden that identifies and promotes scientific and policy solutions to antimicrobial resistance
we are heading toward a post-antibiotic era where common bacterial infections that have been treatable will once again be associated with high mortality rates[13].
… The only true way forward must involve global collective action applying a holistic perspective. This means that both the human and animal sector as well as environmental and financial consequences must be taken into consideration. All efforts are important, from decisions and actions by individuals to large-scale initiatives by governments.
This is an outstanding source of relevant links
-----CARB-X - Combating Anti-Biotic-Resistant Bacteria – funds innovative research – some nice videos and intel on it pages
-----The AMR Centre - Antimicrobial Research Centre in the UK – a public/private organization, it tries to get improved treatments to market
-----The UK’s O’Neill Report identified not only medical challenges and paths to address those, but economic, social and political perspectives as well. This is a rich resource for anyone interested in learning more about what is being done to address the AMR (AntiMicrobial Resistance) problem.
Although AMR is a naturally occurring process, today it is a threat because of two main reasons. The first is that use of antimicrobials has increased so much in the last few decades that microbes are exposed to a much larger number and greater concentration of antimicrobials increasing their chances of developing resistance. The second is that, worryingly, in some categories of antimicrobials (particularly antibiotics) there are very limited numbers of new drugs under development to replace those rendered ineffective by rising drug resistance. Essentially, the demand for new drugs has increased due to increasing resistance but the supply has dried up leaving us in a precarious position.
-----Centers for Disease Control (CDC) page for COVID-19
-----From ArtTechnica. a hugely informative site - Don’t Panic: The Comprehensive Ars Technica guide to the coronavirus- by Beth Mole – 3/8/20
-----WHO – Zaman was a co-author on this look at the impact on humans of prophylactic use of antibiotics in farm animals - Antimicrobial resistance in livestock and poor quality veterinary medicines - might sound intimidating, but it is quite readable and not very long
-----National Geographic – March 10, 2020 - These underlying conditions make coronavirus more severe, and they're surprisingly common - by Niskan Akpan – very illuminating – and there is a short (4 min) video at the bottom on how viruses spread, and how they affect our bodies
-----NY Times - March 12, 2020 - The World Has a Plan to Fight Coronavirus. Most Countries Are Not Using it. by Selam Gebrekidan
-----Vox - March 11, 2020 - Why the new coronavirus is so hard to cure by Umair Irfan - excellent, concise information in this one
-----Wired - March 19, 2020 - The Doctor Who Helped Defeat Smallpox Explains What's Coming by Steven Levy - definitely worth checking out
-----National Geographic - All their Corona Virus Coverage - no subscription required
-----Washington Post - March 23, 2020 - What the structure of the
 coronavirus can tell us by Bonnie Berkowitz, Aaron Steckelberg and John Muyskens
-----The Atlantic - March 25, 2020 - How the Pandemic Will End by Ed Yong
-----The Guardian - March 27, 2020 - 'It’s a razor’s edge we’re walking': inside the race to develop a coronavirus vaccine by Samanth Subramanian
-----The New Yorker - From Bats to Human Lungs, the Evolution of a Coronavirus by Carolyn Kormann -- “It has the lower-respiratory severity of SARS and MERS coronaviruses, and the transmissibility of cold coronaviruses.”
-----The New Yorker - April 20, 2020 - It’s Not Too Late to Go on Offense Against the Coronavirus by By Jim Yong Kim
-----The Atlantic - The Problem With Stories About Dangerous Coronavirus Mutations by Ed Yong - Very interesting article
between our insatiable need for information to assuage our anxiety and uncertainty, the media’s tendency to report uncritically on incremental studies, and social channels that amplify extreme voices over careful ones, it’s no wonder that confusion reigns.



message 2: by Adrienne (new) - added it

Adrienne Day Thank you Will for introducing me to this book and the Extra Stuff. Putting this on my list. Not sure I could read it now- My panic is just manageable this week.


Will Byrnes Thank you, Adrienne. There is plenty of concern to go around.


message 4: by HBalikov (new)

HBalikov Excellent discussion, Will, of why this is important. How much did this add to what you already knew from Spillover?


Will Byrnes Thanks, Henry. Have not read that one.


message 6: by HBalikov (new)

HBalikov Will wrote: "Thanks, Henry. Have not read that one."

I can only imagine how long is your TBR list, Will.


Will Byrnes Stands at about 10-12 years worth at present, and my wife brought in two more plague books today.


message 8: by HBalikov (new)

HBalikov Will wrote: "Stands at about 10-12 years worth at present, and my wife brought in two more plague books today."

I am not sure that "more is better" Will, but at least you will have plenty to read as we "shelter in place."


Will Byrnes Speaking of plague books, here is a new short story from Boston Review, an optimistic slice of virus-induced post apocalypse - Cannibal Acts by Maureen F. McHugh


message 10: by Natalie (new)

Natalie Richards So informative, thank you.


message 11: by Will (new) - rated it 4 stars

Will Byrnes Thank you, Natalie


message 12: by Lyn (new)

Lyn Elliott Thanks for this informative review, Will. And I enjoyed your own touches of humour.


message 13: by Will (last edited Mar 21, 2020 09:07PM) (new) - rated it 4 stars

Will Byrnes Thanks, Lyn


message 14: by Deborah (new)

Deborah Excellent and timely review!


message 15: by Will (last edited Apr 09, 2020 09:21PM) (new) - rated it 4 stars

Will Byrnes Thanks, Deborah.


message 16: by Kristi (new)

Kristi Krumnow Thank you for your review and helpful explanations of scientific blahblah put in average parlance.


message 17: by Will (new) - rated it 4 stars

Will Byrnes Thank you, Kristi


message 18: by Cecily (new)

Cecily What a fantastically comprehensive review.

Will wrote: "==========In the summer of 2019 GR reduced the allowable review size by 25%, from 20,000 to 15,000 characters..."

The most annoying aspect of that change, imo, is that it makes it impossible to edit old reviews - unless you remove as much as 25% of their content.

Worse still, when reviews are sometimes merged because two (sometimes utterly different) books are merged, the automerged review can be a terrible mess, including duplication, but you can't edit it. And if it's a review with lots of interesting comments, deleting and starting again, isn't much of an option.


message 19: by Will (new) - rated it 4 stars

Will Byrnes Thanks, Cecily.

Editing old reviews that exceed 15k characters does indeed entail splitting them up, using the comments section for Part II, or whatever. Going forward, I have learned to reserve the first comment when writing new reviews, for anything that might challenge the new boundary.

Another option, much less appealing because it disrupts extant comments, is to delete the review, then re-create it using comment #1 for the newly required Part II. One could, I suppose, cut and paste comments to a group comment in the new one, but links to the commenters would likely be lost, and why should we have to jump through so many hoops to make minor or major edits on existing reviews? Not GR's finest hour. And while we're on the subject, you might take a look, if it is something you care about, at whether communications,messages you have posted and received through GR are still there. I have discovered that older messages have gone the way of the 20K character limit, sans notice, just pffffft, and gone. And there never was a way to back those up through GR. At least reviews can be backed up, although having to split them up decreases the value of that backup. Thanks a lot. Yes, just a wee pit pissed about this.


message 20: by Marty (new)

Marty Fried Great review, Will. I suspect your review is more interesting than the book, although I did waste time watching the Society for putting things on top of other things (again).


message 21: by Will (new) - rated it 4 stars

Will Byrnes Thanks. Marty. Always loved that particular bit of silliness.


message 23: by Jim (new)

Jim good review Will


message 24: by Will (new) - rated it 4 stars

Will Byrnes Thanks, Mousie and Jim


message 25: by Mukil (new)

Mukil ooooooh will bryens


message 26: by Mukil (new)

Mukil NICE REVIEW , BYRENS
KEEP IT UP


message 27: by Will (new) - rated it 4 stars

Will Byrnes Thanks, APEX


message 28: by Mukil (new)

Mukil oooooooooh he just commented my comment!


message 29: by Will (new) - rated it 4 stars

Will Byrnes he did


message 30: by Sue Em (new)

Sue Em Fascinating and excellent review! Thanks, Will!


message 31: by Adheil (new) - added it

Adheil InSTallments
W


message 32: by Will (new) - rated it 4 stars

Will Byrnes Sue Em wrote: "Fascinating and excellent review! Thanks, Will!"
Thanks, Ess Eee


message 33: by Will (new) - rated it 4 stars

Will Byrnes Adheil wrote: "InSTallments
W"

no idea


message 34: by Celia (new)

Celia I not only like your review: I APPRECIATE your review. We are all frightened of COVID-19. I now understand it a little better. Thank you, Will, for your in-depth research and your totally captivating review. Somebody said your review is probably better than the book. I agree without reading the book right now.


message 35: by Will (last edited Apr 22, 2020 09:02PM) (new) - rated it 4 stars

Will Byrnes Thanks, Celia. As for being better than the book, I appreciate such generous and warm-hearted strokes, but a summary will never compare to the source. Hopefully it can encourage readers interested in the book to check it out for themselves. And the added links also lead to very enlightening information.


message 36: by Barbara (new)

Barbara From your well written review, Will, it seems that much of this book is about bacterial infections and less about viral infections?


message 37: by Will (last edited Apr 24, 2020 12:10PM) (new) - rated it 4 stars

Will Byrnes Thanks, Barbara. The primary focus is the history of people vs pathogens, of all sorts, but the majority of the info here is definitely bacteria-centric.


message 38: by [deleted user] (new)

Fab review...really insightful and yes timely relevant.
I hope your family is doing well. Just an FYI: I'm high risk covid. Having spent 20 yrs with my friend pneumonia along with her sidekicks the just confirmed after 20 yrs chronic bronchitis (which I'm told was acute till I put my foot down) the ever lovely mild copd/mild asthma, the inevitable severe anemia with what I'm told is computer generated HUS (fatal blood disorder) pre diabetes with a recent Influenza A confirmed by ER visit probe on January 5th for IV and EKG and much more too lengthy to list here. Ahhhh! The beauty of life beholds us but I will pray for all of us to get through this safely. As you noted 18 yrs is quite enough time we should hope and thankfully my retired RN/OBGYN mother won't have to go back as she too is high risk with her heart conditions


message 39: by Will (last edited Apr 27, 2020 09:16PM) (new) - rated it 4 stars

Will Byrnes Thanks, neighbor. We are all hangin' in just fine so far. Hope you and your loved ones manage to sail through this storm unscathed.

Sorry to learn of your medical challenges.

Research on a vaccine for the earlier SARS bug has not progressed because Big Pharma did not see an adequate ROI, so put their research money elsewhere, a clear case for government-sponsored research.


message 40: by Jill (new)

Jill Mackin Hi Will, Just purchased on the basis of your excellent review. Thanks.


message 41: by Will (new) - rated it 4 stars

Will Byrnes Thank you, Jill. Hope you will check back after you read it and let us know what you think.


message 42: by Sarah (new) - added it

Sarah As someone who has been on many antibiotics in my life, I'm not sure if I should be excited or wary of this book. On my tbr anyway!


message 43: by Will (new) - rated it 4 stars

Will Byrnes Probably both


message 44: by Kara (new) - added it

Kara No thanks Will, I don't need anything more to remind me about what's going on now and add to it thinking about what could add to it. Enough worrying wears a person out. But have a good night and keep up the good work.


message 45: by Will (new) - rated it 4 stars

Will Byrnes FWIW the history of science teaches us that we can learn to take on the challenges that face us. I found it more encouraging than discouraging, and expect that it is only a matter of time before a solution to C19 will be found, at the very least an effective vaccine.


message 46: by Kara (new) - added it

Kara For those of us who are immunocompromised I sure hope so.


message 47: by Will (new) - rated it 4 stars

Will Byrnes For all of us I hope so


message 48: by Maureen (new)

Maureen Caupp Great review. Sounds like a very interesting book.


message 49: by Will (new) - rated it 4 stars

Will Byrnes Thanks, Maureen. Quite interesting.


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